NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102963_1098347

Scaffold Ga0102963_1098347


Overview

Basic Information
Taxon OID3300009001 Open in IMG/M
Scaffold IDGa0102963_1098347 Open in IMG/M
Source Dataset NameSalt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1193
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location NameSouth San Francisco, USA
CoordinatesLat. (o)37.4973Long. (o)-122.1295Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008856Metagenome / Metatranscriptome327Y
F044214Metagenome / Metatranscriptome155N

Sequences

Protein IDFamilyRBSSequence
Ga0102963_10983472F008856N/AMKLSQQQMRRMYSHPDPDLDLDEEFWPLMGIFVAILLGWTGLVHLIDWLTFDAIPLWLEPFTIAPLIFLVVMKERYDSINPLHWWPMFWGYRCPLPEEDHITIRPLEVDDVLKKYGGRMNVFIVDHEHIKFRKRKDAVMFGLTNLIS*
Ga0102963_10983473F044214AGAAGMQGKENKVDLQDEIRILRLQLGNLEVQIADYQQIVKELSDKLRLYEEISGSVFRPARK*
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