NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0100377_1064785

Scaffold Ga0100377_1064785


Overview

Basic Information
Taxon OID3300009004 Open in IMG/M
Scaffold IDGa0100377_1064785 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1759
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001258Metagenome735Y
F007959Metagenome / Metatranscriptome341Y
F037574Metagenome / Metatranscriptome167N
F044906Metagenome / Metatranscriptome153N
F060596Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0100377_10647851F007959N/AMKRHTDFEQFKQEYKKDFDIPVLSAKEKDIFIHLFLLLRRKMSEGMFPELMNSEIMFSKSDLKTLVLKGIVIFQNHKKGWIISMNPNYITKNAECSFCGAKFSEMVYFRRNSIRCPGCGIRMHGSTTAKRVNDYSVAITNIEKVEAIPKVTTSVVPIEHVITTIPGFLKITDIVLAPTAMERTIQIANQEVIPFITNRADKLNALS
Ga0100377_10647852F037574N/AMTGIFADEANEYTTITISKDTAKKLKEFFLGQETYNYVITFLLDYHDEKTYRF*
Ga0100377_10647853F044906N/AMDSNNKKEHTTIQTKTNVANRLKKMLRVGVTYDDIITDLIGYYRATK*
Ga0100377_10647854F060596N/AMKNIEAMVGAIPISDENIKKSEVAKKKMAKNRTMVLLDRKVVDRLCCCKTKIGNTYNSVISNLLDEYENKINKDGQ*
Ga0100377_10647855F001258N/AMENKEASVGAIPTQEKKQQAEEEGKKYIRKENEVIFCLEEAPEYQISAVARWGENPLGEIMSCPDIYFRHISTGRLCQSVSACLAGVEHDQYAAEKWDTLYYRIRTMLVRDLRRIVCFEKKYEIHPI*
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