NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103710_10073405

Scaffold Ga0103710_10073405


Overview

Basic Information
Taxon OID3300009006 Open in IMG/M
Scaffold IDGa0103710_10073405 Open in IMG/M
Source Dataset NameEukaryotic communities from seawater of the North Pacific Subtropical Gyre - HoeDylan_E2
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterWoods Hole Oceanographic Institution
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)816
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Eukaryotic Communities From Seawater Of The North Pacific Subtropical Gyre

Source Dataset Sampling Location
Location NameNorth Pacific Subtropical Gyre
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002650Metatranscriptome539Y

Sequences

Protein IDFamilyRBSSequence
Ga0103710_100734051F002650N/AVAFKSVAMQSTGVFVLACLYSASAVNLRSAPDVASEVQREMQQNIQIHDGFMAQEGQDAQTVSEVRADHDLSQLQLNNGGKWLVALDKDMKTKMLVEAAPKKAAFVSGIKDPCSGITCGKLSCPAGFASTEVDGHCCPYCVNPDIKLEEVITGATGTNGGKASTFCPKVWCFPTMCTKELTAPSTTNALPVNMASLSYLVTIGGETEASSPFQMAVRTSAQCTKSLLTKWP*
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