NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105105_10037031

Scaffold Ga0105105_10037031


Overview

Basic Information
Taxon OID3300009009 Open in IMG/M
Scaffold IDGa0105105_10037031 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2143
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0991Long. (o)-99.1044Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y
F043905Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0105105_100370311F001165N/AMKDNTPRIPDSLDMQRLQAMQLVARMKETSDRLGIGFIGGFIAPNGEKFVMSNMDDEDYNALMPEDLK*
Ga0105105_100370314F001807GAGMTVLAIEDTLFTDTHVTVTAVVDEMRLLYRATHLDPEEWAPALCQTTIELDPEEPIPLDEDGFCSYLDQLDPQWQVLSPDDI*
Ga0105105_100370316F043905N/AMQFQLPSNLQTELLAYDPTLKVLAKEAKAKTTKKAKYPLGNIPHLIPYNVVRESDQQAAIDHINQQKAPDRYRVFTTPVDVATPQARLKVIAILYHYEQVWYAAWLPPKQQADEYVYGHAYAFKNTAAAAKTAPHHIWTSKDKCIEHEGARGVQTFTYSMNITKGDIESSEGSGWRAYQWQAFNLHCQKGREIMEHCVRPYEASLRENMPTWSDSRGLFDRMRCKNIFDAADIPSAMIKCFD
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