NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105251_10320979

Scaffold Ga0105251_10320979


Overview

Basic Information
Taxon OID3300009011 Open in IMG/M
Scaffold IDGa0105251_10320979 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)704
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018870Metagenome232Y
F069643Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0105251_103209791F018870GGAVKPPRNLVLGLKKWIGHVRCEKTRRNFGSIKWCIVCTPKPDLITGTSRQRNHAKPPRNLVLGLKKWIRHVRCEKTRRNFGSTKWCILCTPKPDLTTCTSRQRNCAKPARNLVLGLKKWIGQVRCEKTRRNFRSTKWCISCTPKHDLTTGTSRQRN
Ga0105251_103209792F069643GGAGGVRSGFRVHTMHHFVLLKLCLVFSQRTCPIDFFRPKTKFLCGFARFRCREVPIVRSGFGAHTMHHFVLPKL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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