NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_100298190

Scaffold Ga0066710_100298190


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_100298190 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2360
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002111Metagenome / Metatranscriptome592Y
F008327Metagenome / Metatranscriptome335Y
F019193Metagenome / Metatranscriptome231Y

Sequences

Protein IDFamilyRBSSequence
Ga0066710_1002981903F002111AGAAGMAAISVLPFVSYSSMTETLIPAAQWPTVYSSLQALKGHVQEYPGCQSFDVFVRAEGDGDVLVHCYTTWDTPGQLEVFLERGYTFDRLLADIGSGLSAARSLVMEKVF
Ga0066710_1002981904F008327AGGAGGMFPKGDTPEKARDFYLYLQGHHEAEGRVATWHVDWLSLAWLWGFLIVLVLALLLWVKQYRTTRQRPGIYPIDSFGGWTTEGAGPATIFFTLFTAFIIAFAVAIIVGHIVYGQKF
Ga0066710_1002981906F019193N/AWLKSRQKLTDNASFAKKPVTDPFMQEAMRVLPGLSPADKFLLNDGKTSLSLADAAAGIKAIYQDLLDRAWTEARARGDKLPPEEQKAIPPTVPGQQ
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