NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_100713491

Scaffold Ga0066710_100713491


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_100713491 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1530
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008488Metagenome / Metatranscriptome332Y
F030007Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0066710_1007134912F008488AGGAGGMHRSYIGGSREVAALMAFALLSVLYVNASAADDTPVRFQGRVLWIAGETLLVATDDSQSINVDLTQVPQDEYQRLESYDRVVVTGTIPTEGNRVVATSIEPLEQ
Ga0066710_1007134913F030007N/AFRLGFILITTTAWGQTGQTSEQAAQRWFQVRWAPPTDGAVPSIKGSVFNDSPYRVTDVRLQVEGLDADRHSIGRTLVWAFGDIAPGGETSFVAEPMPGAVNYRITVVSYDLVSLGQVP
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