NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_100722135

Scaffold Ga0066710_100722135


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_100722135 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1521
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009773Metagenome313Y
F042551Metagenome158N

Sequences

Protein IDFamilyRBSSequence
Ga0066710_1007221352F009773GAGGMRSRPVRPNIYLPVVRFGVADSDCFTVLLISCTGYLLPVPFGITVLYVPLQMWTWLLVTVGSIAFFNYIRIGRRPRWLQHRVKALFFHHRHCRSIPNGKRRGFTRRWIIDSDVTDQSDSQHAEATTAIRCLIEHNSQFQEACEEKWNTLLLTTN
Ga0066710_1007221353F042551N/AGVIGAVLLMVFGVASVSAQTPTGSFFNGNSSQLGNSLRSVTFFLAAAMIIAGIIFIAVGIVTSGLRESLSTWKFITGAACFAFGGVCAAVYAFSQGDSVPLDNTF
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