NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_101003381

Scaffold Ga0066710_101003381


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_101003381 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1288
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001925Metagenome616Y
F018335Metagenome235Y
F093604Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0066710_1010033812F001925N/AVPATVEDSEQEAATVAFAVILTGAGHVTVKPVAGLVTGVRATVPAKLNVLVRETEIAEPVAPELKFTGLPTEIVKSPTCEMKLAE
Ga0066710_1010033813F018335GGAGVTAPETTVKLAGQLAARPVEGETTVVRVTAPVKDPIGVIVIVELPVAPVLKSAGEDAEIEKSTVAKVNTAVA
Ga0066710_1010033814F093604N/AVPVPFAVSDTGVTVNALQVKPAGRGVSERATEPTKLNVLVRVIVDEIDEPVTPLGDVALIVKSPTWTVELAE
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