NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_101441086

Scaffold Ga0066710_101441086


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_101441086 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1066
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002354Metagenome567Y
F030382Metagenome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0066710_1014410861F030382N/ASIMYPVMAEPPLSVGADQLKLICEETVVVVSALGGDDATARVVADAALEGGVARTEVIVDTL
Ga0066710_1014410862F002354AGGVLWLKPVSEYVFSALPVFATRVIHVEPPSADLSILYPVMAEPPLSVGGAQLKLICEEDTAVAVSPVRGDAVTVGVVAEPLMEGEPVPTELMAETL
Ga0066710_1014410863F002354N/AVAQVVPPSVDLSILYPVMAEPPLFGAVQLKLICVEEATVAVSPVGGDGRTARVVADALLEGELTPTALMAETL
Ga0066710_1014410864F002354GAGVVAVLPEFDTTVDQVAPPSVDLSILYPVIAEPPLFGAVQLRPICEEDAAVAVSPVGDDGATATVVADAVVEGEPVPTELIAD
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