NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_102069643

Scaffold Ga0066710_102069643


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_102069643 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)839
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000336Metagenome / Metatranscriptome1274Y
F003318Metagenome / Metatranscriptome494Y

Sequences

Protein IDFamilyRBSSequence
Ga0066710_1020696432F000336N/AMPSAGKRKHKKPRKSELDSALGQVSDESVAAAMKEFQDLLVQAKVDTTELIRQNAEELERRLILLKKGKIDKEDFDFFVENQKRALRVFIDSQPAQAQERAEKLTLHVLEIAATKVAPLLLAMI
Ga0066710_1020696433F003318N/AFAVPRKRFNAAAFEAKVNEGNAKFQQTIANEKFTARRPVLIDLKAQFDADATHLRSKASRGKITPALASEMKKDVNKIYDHALGR
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