Basic Information | |
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Taxon OID | 3300009023 Open in IMG/M |
Scaffold ID | Ga0103928_10084638 Open in IMG/M |
Source Dataset Name | Planktonic microbial communities from coastal waters of California, USA - Canon-29 |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 979 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Sar | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000457 | Metagenome / Metatranscriptome | 1112 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0103928_100846381 | F000457 | GGA | MSGNKKRVEEYFRVFKNPNCRLDPQWDYYDWVLNKSRYMTQLKKAGIPMIPTVIYTNGFDPKRCLMDVKKQGWEKFLCKVGHYTFFGSGAIHGKTEDFEGKRAKDLEAYAKETKNSKTFLLQPYTLKPNGEVFDEVRNFFIDGQWRYSVFTHGTDGSDAGYYQEPDGPRKEACKALAERVYEEIIKTSTFEGKKQTPLLNRIDIGVIPRKGADSLHKTDNTYFCNEIEMICTTWLDRYSPINVADNMAQASVKHSLELLAKMINAGRKVPDAPQVKETVDQLSKRLGLSIKVK* |
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