NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103928_10147978

Scaffold Ga0103928_10147978


Overview

Basic Information
Taxon OID3300009023 Open in IMG/M
Scaffold IDGa0103928_10147978 Open in IMG/M
Source Dataset NamePlanktonic microbial communities from coastal waters of California, USA - Canon-29
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)793
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024727Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0103928_101479781F024727N/AQAPVAIAGRRRFCCFREGCCIMAKASDLIGWYDLAWKGGSFDICLRPAGYFYCPKFQAQARWELEDGIVKIDWAKFGKYELAVAEDKSMEGHAVPKKPEDENNWRKATFKRPLSAEEMAIIGDGAGTEYDFAWTGGSFPVQFKADGFNHFKCEDFPAHAHWSLDGDKLFIDWDQYGKYELKVDGENKTLSGGPIGGDWENDWRKGKFTRNLIDNKVVEACEHHH*
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