NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0103707_10000357

Scaffold Ga0103707_10000357


Overview

Basic Information
Taxon OID3300009025 Open in IMG/M
Scaffold IDGa0103707_10000357 Open in IMG/M
Source Dataset NameEukaryotic communities from seawater of the North Pacific Subtropical Gyre - HoeDylan_S2
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterWoods Hole Oceanographic Institution
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2825
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Eukaryotic Communities From Seawater Of The North Pacific Subtropical Gyre

Source Dataset Sampling Location
Location NameNorth Pacific Subtropical Gyre
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085090Metatranscriptome111N
F094857Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0103707_100003572F094857N/AMSKPAEKLDQEECLETWDPLADLENPECLVKLADRDLLERPGCPVKRALMDQEDPQAKEDHRDLKACQAWKAVREPLVLMDLMDRLDHLDQMDLLGIEEFLVYQVLLAQLELQANKDHKEKGEILASQESRALRDHLGLLVLLGLLEREVSGVRRVHQESRELQGWAVDLVTRVHLVQQE
Ga0103707_100003573F085090AGGAGVVCQDLLGWLASLDQLASLDHLVYRAALERLDHRDSLEPRATVVSLAFRVFLDPLDLKDRRDLQVKMERMESQVQWVGAVLQDLMDPLVVWATLVNQDQEDHQARKAREVHLANLVLLGLLALQARAMEWTWLL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.