Scaffold Ga0105048_10000202

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105048_10000202

Scaffold Ga0105048_10000202

Overview

Basic Information
Taxon OID	3300009032 Open in IMG/M
Scaffold ID	Ga0105048_10000202 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-05
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	84742
Total Scaffold Genes	66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (34.85%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location Name	Lake Fryxell
Coordinates	Lat. (^o)	-77.605	Long. (^o)	163.163	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F088614	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105048_1000020232	F088614	GGAGG	MSWEIKLDGETDVVVLAGEMGIQSAAEFHQAVLPLAGSSRAVRLDAAAAKSVHTSILQILHALSQAVDDFAVTDASDEFRAAERRVGLYFARTGQTGDQVHGTGETAQR*

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