Scaffold Ga0115863_1000088

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115863_1000088

Scaffold Ga0115863_1000088

Overview

Basic Information
Taxon OID	3300009034 Open in IMG/M
Scaffold ID	Ga0115863_1000088 Open in IMG/M
Source Dataset Name	Intertidal mud flat sediment archaeal communities from Garolim Bay, Chungcheongnam-do, Korea
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Macrogen
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	106262
Total Scaffold Genes	90 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	50 (55.56%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Sediment, Intertidal → Subsurface Anoxic Archaea In Intertidal Mud Flat Sediment

Source Dataset Sampling Location
Location Name	Garolim Bay, Chungcheongnam-do, Korea
Coordinates	Lat. (^o)	36.88	Long. (^o)	126.38	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F082079	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115863_100008823	F082079	GGAGG	MQIKLLHAVLSGALIAFLLGFYLIPETWQLMSREPIFGPITTGMATIGIVVTVTIIAITLFSFKLVKRIEE*

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