NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105095_10089081

Scaffold Ga0105095_10089081


Overview

Basic Information
Taxon OID3300009053 Open in IMG/M
Scaffold IDGa0105095_10089081 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1670
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0991Long. (o)-99.1044Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059136Metagenome134Y
F099519Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0105095_100890812F099519N/AMFRQRAVSPLLFGSLVTTLLVIYACVAAIGLPVLESTRPTAAVAESLRPKLAADEQIGLYRLEKWRFSLRYYLERPVSRLQSSTEVRDFLNTRRGYVLMLDEDFARLQHEGVRLRVVAERPAVTGTTGKGLRRQKWGALVVATSDDTPRTTER*
Ga0105095_100890813F059136N/AYYTGMTRRTLLALVLGAFVVGAAAAAERDWQTGTWREYKVERPRVLFSAETRDPNSNLPRTRAAREIRLYVIETRTHRLELRQDATVDTPRIDVLIGEPVQLAIDKKTVYVKDADGREHKLSLRKQAEIGK*
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