Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10001561 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10001561 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16994
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (70.27%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

16994

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (70.27%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000649	Metagenome / Metatranscriptome	960	Y
F008750	Metagenome / Metatranscriptome	328	Y
F009735	Metagenome / Metatranscriptome	313	Y
F016782	Metagenome / Metatranscriptome	244	Y
F017814	Metagenome / Metatranscriptome	238	Y
F024973	Metagenome / Metatranscriptome	203	Y
F088507	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000156110	F088507	AGGAG	MNTCCDYGKCTNGPDCPVRKQRTKEANDAYMNRSNGLEPDLLDDIAATFKGLIALMFVVGGITLLAFAIWGK*
Ga0114973_1000156112	F008750	N/A	MEMLKEPFKKPSPLEVIATELADAHLSKLEAETACEYAQSIVDYNVVRITRLNSRMDEYRTDIDAIKIGGTK*
Ga0114973_1000156116	F009735	AGAAG	MTMMSGVVESVSTKDVTTKFGVKPTYSFKVNGTWIKCGFKNPSVDVGYTVDFDGVTGTYGIETKAVNIISRTSIAPVATASTAVTSTTAVPKSYGGGYKDKVFPIPALHGDRAIVRQNALARATDLYIAARGGKPFELETTTLDLVIKLARKFEAYTAGDLDMAEAMEENEINEEVISLEGE*
Ga0114973_1000156125	F016782	N/A	MLPFLEIEMDSPVMSTLYAAATESLVSDASATSTFEKMISVAFTHGTIETFTKDLRDTEKQIKKEFEVTSMPGPWRSAKSVIQTAMKLKIGLVDDNGGYLGKTNLQNQIKKLKVGVKEPVTSEEYGNKIIKMLMTIPDDLDSALICKMVQEFLE*
Ga0114973_100015613	F024973	GAG	MIWTLVLVTGINMNSIMVVGYFEMESACQRAAKEWRDLGYKVGCVQSVVKK*
Ga0114973_1000156132	F017814	AGGAG	MAQGQNDFDFNNFNAMMERKPAGLQIFLAQQLLSNALWSMEKYDNPRSFEVRDALNSIKALRQLMKDDAAARATAA*
Ga0114973_1000156136	F000649	GGAGG	MSKNKTHYLPDGKVYKGDTHKSGTVLMTGAKHSPTSKVLSHTPPKKKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10001561

Overview

Ecosystem & Geography

Associated Families

Sequences