NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114973_10022366

Scaffold Ga0114973_10022366


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10022366 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3907
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015599Metagenome / Metatranscriptome253Y
F018537Metagenome234Y
F018924Metagenome232N
F030760Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0114973_100223661F030760N/ATMHDIEIVSKSGDTITIKGLSYSTIMNKASKNTELKSITITKQYDKKIK*
Ga0114973_100223662F018537N/AMPAGRTSNYIATIPMKNEEQVLEVKKVLEQIFGWVTLRGRHSDRKSVVKGWGRSQQNDVPWRVAQYIDIYLHHANPNRIRISQKKGMERKNLSLSDKNVMIARMLGSMGHSLADGVKHTEQSKGIPALQAIKYLQYQTQMQDPKFQRKEMKRKYMNKSYKLQKGDWGYIAQELLDYTYLSQFVTFTQLKKYYDITLRGNSSSQNGGSFIHHLQSLVSPANALGRRCKRYLHKDIVTGKYRIATM*
Ga0114973_100223663F018924N/AMTNSEKAIAQLFGVLCSIVKSEHTPQATKQATISTFQHLIGDKSSPFMTDELFELSTAMDNEMQSIVRQLNGDRVLNEVLTNNINLN*
Ga0114973_100223665F015599GGTGGMKLTIKNYEKLFRKEWDDKNYIEDIDENRNEYRINVWREHMRHFIILERRPVENGYYKIGKWSNEAMCVRYPYWIKHEDIVNINSLMDKLKLMTDEWKPKLL*
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