NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114973_10102567

Scaffold Ga0114973_10102567


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10102567 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1624
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038999Metagenome164Y
F059896Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0114973_101025671F038999AGGMNKELEQNTKLSFPCSCNGCRNYPTRPAEIWHESQIASKAQGYFFTPETMRFFKSRIADFKPVGISPSGVDSLMVIVSNKRDDDPRYYEIVTLCPYGELGREWARDNTGEPIINYASLNEARKSARWNCTIAPQLCDCHGCQLDKAGR*
Ga0114973_101025672F059896AGGCGGMDSCDKCELMARVTVSGFIVPRYLCAFHASELCESVGDQAGADKFAQLMAGDRVSA*
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Institute for Fundamental Biomedical Research
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