NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0115566_10010700

Scaffold Ga0115566_10010700


Overview

Basic Information
Taxon OID3300009071 Open in IMG/M
Scaffold IDGa0115566_10010700 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120405
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6974
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (53.85%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005547Metagenome397Y
F030886Metagenome184Y
F041168Metagenome160Y
F059942Metagenome133Y
F070089Metagenome123Y
F074757Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0115566_1001070010F030886AGGAMSYHGNPPPDYNQVGIAVVNPLHRIEQKLKKVQDILDNISDVSVLTANDLKIKIQRVMDGG*
Ga0115566_1001070012F041168GAGMKQAKVKRHTVGFFRNDAEVPFINLEMFETITAATSIPHYWRDNDGNVSQFWHAGVIPKGTGVSCTHRERGMKHTFWTVTDPESDLIGKVFVIGHTFKDRTEEEFEKFEYSNISPTLKYSILAEKPLTK*
Ga0115566_100107002F074757N/AMLKWRQKIWFEKKPLVGLVIRVEDNPWQSKREVSTNEKTFYYIKWVQDGPGSRYGRTFHSTDGYFLRNDLKFVKKGDFK*
Ga0115566_100107004F005547N/AMYKEKEMKVWVMQGSYEGEVFSSVHFTQKGCALACIADVLEFHGVDSAEDALRVMNDCYAYTETDGEQTEPFEWDYEKMKNMSSKELWKIFSEWTEISWDRMADRSYNIDAQPMEIQG*
Ga0115566_100107006F070089N/AMVRVQCSFLDDFAVKVGDLVKFESVLNDSMDHHTVEHGLVIQLSKTGHDTLSAQVLFNDGETWWVDSGRLEVVSESR*
Ga0115566_100107007F059942GAGMKVGDLISFKPINFGLEDWSNPCIVISEYESPNEGLWSIWCEGVFCVIDDTNYEIMYLTGS*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.