NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115566_10075693

Scaffold Ga0115566_10075693


Overview

Basic Information
Taxon OID3300009071 Open in IMG/M
Scaffold IDGa0115566_10075693 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120405
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2210
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008453Metagenome333Y
F017473Metagenome240Y
F020259Metagenome225N
F024582Metagenome / Metatranscriptome205Y
F069998Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0115566_100756931F024582N/ANQNLNYMKCTHNTLTSLLSAWDKLEVVGINPDNHKSILTNTFIDGGTRKIAIEYRIEDNNGGGLPYVYAFLVMYDQNGHRRSVLKNGGWGCHGDDILEFKRWFREKLQVANNMQEQRIEDAQDNIAAFLS*
Ga0115566_100756934F020259N/AMTEQTFTAVADWAERIQMMTQENSLINAQDIVHDVFGMLRDDEHFIPRL*
Ga0115566_100756935F069998N/AMTKKELIDFMSDYPDDALVVIEVHDTTLYEDLYDFTFDGISWVRTHPNGIQKEMHELRLCPLNHNEK*
Ga0115566_100756937F017473N/AMKHERKEEHIRNIAFCISDGASGYVTDNFRIEDLPVPQRTGTMTQQDTYAKHKARQIFEAFLEQNPNIDD*
Ga0115566_100756939F008453N/AMKYTVYRVFRDWEKRPEVLMDGLTREQAQTIVKNTPSNDNSMVVFDEEPRDKQW
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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