NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115549_1005054

Scaffold Ga0115549_1005054


Overview

Basic Information
Taxon OID3300009074 Open in IMG/M
Scaffold IDGa0115549_1005054 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100430
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6581
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006240Metagenome / Metatranscriptome378Y
F050340Metagenome / Metatranscriptome145Y
F060337Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0115549_100505411F050340N/AMNHEAFDKMMGYAMHTVTELVEKAKEINRNSIIALNNRDLTDNGIEND*
Ga0115549_10050545F060337AGGMKMEYNEVTITLPKPPSLNKWYSGKHWSIRKKQKESYSASIKDQLEGIDRFTMDRFKVDVEYNCRYDVDNAITCIKFLADYLRGDGYVMDDTPKYFFSQSTTFNPELNKDEFKATIKCYGYAVRE*
Ga0115549_10050548F006240N/AMAYLDNKKHKHIIDCVLHQNAKLFQNLGLDSSRSEYDRAKIAERQKLRRIRDIDPEKIDRLIKDSLDD*
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