NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115549_1014558

Scaffold Ga0115549_1014558


Overview

Basic Information
Taxon OID3300009074 Open in IMG/M
Scaffold IDGa0115549_1014558 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100430
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3303
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012575Metagenome279Y
F055560Metagenome / Metatranscriptome138Y
F066795Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0115549_10145584F012575GGAMSVTEYIEEQAFVYRVVSDYKEVYIEWHMKDLPHLFTGRASSHEEKIEQYKSVLKELKKMRKPNQ*
Ga0115549_10145587F066795N/AMNLTKTFPKMTNNDWRKLQLSTDAKNQRDWASRRLHDMENDPDNFTLRDYLKVKAGYNTAVETLKEIQ*
Ga0115549_10145588F055560N/AMKNNQENTDIEELFNSLKPSKKEQAIVWLVSPVIVLTSWAVLIWLCSQ*
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