NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0115552_1094741

Scaffold Ga0115552_1094741


Overview

Basic Information
Taxon OID3300009077 Open in IMG/M
Scaffold IDGa0115552_1094741 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110328
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1297
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024562Metagenome / Metatranscriptome205N
F026288Metagenome / Metatranscriptome198Y
F058695Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0115552_10947411F026288AGGTGGMPTAKQSWLNRYETYYAQTEYNKKHYGKRIKQLKRMLEDEEFLEFLSHKEHKEDILLFLAKSNQFDMYIVFNEQGEPYIADKDFGLIN
Ga0115552_10947413F024562AGGAGMAIIYEKNFTDPNEKIVRQFTNCCGASDKGSEWGIVCRGCYSPIEGYMADGDDSPEEFENLINSESVLKEFREFVSQEWNTYIEWHDYMINKIMKERKND*
Ga0115552_10947415F058695N/ANDGYNTLPDYQTNDEGKTYINGAQCTLNELQKQIVELKQGLQLGKNFSLLGGNN*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.