Scaffold Ga0102814_10098855

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102814_10098855

Scaffold Ga0102814_10098855

Overview

Basic Information
Taxon OID	3300009079 Open in IMG/M
Scaffold ID	Ga0102814_10098855 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1602
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2	Long. (^o)	-123.94	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033250	Metagenome	178	N
F038464	Metagenome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102814_100988552	F033250	GGAGG	MDVNLSTVRQLSPVFEAGGTIDLEVLRPILEQHAASMVEDARTGWPVDTGISREAWQAEIDVSSTELFVSLINEARQRGRGYAVYVHRARSQRLVWTEVQERLTLNLIPALQADIAVTLAESMRG*
Ga0102814_100988554	F038464	AGGA	MKTITLSPLHDLQIRKPASWTALVDLTVCWPTDIEDPRFRARLVRCSAAAIGLVLDDERLPLPSYRTESMDLVAYGVSVVEVLIPQRVQLAEILRAGREVADWLAGTLPSEQEVSQTADFTDGEASVT*

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