NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102814_10193984

Scaffold Ga0102814_10193984


Overview

Basic Information
Taxon OID3300009079 Open in IMG/M
Scaffold IDGa0102814_10193984 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1108
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2Long. (o)-123.94Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078699Metagenome116Y
F098687Metagenome103Y
F098812Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0102814_101939841F098687GAGVRELSKLYPTATFEMVSGSIENDCHYEFTCEDGKFEETCSYETFKEAVADGKWG
Ga0102814_101939842F098812AGGMPNWVMNELTCTFQTTEEYNAFKEKANTEGFFNSFIPMPAVLEGTRCPHIAPGDFIKQTNLRNKTNFLTLEGIALAGDKWDAESAKAIMQNIKAFEQTGYHEWYAWNLDTWGVKWEASKCKISNDYPKEN*
Ga0102814_101939843F078699N/AELGEINGDFPYFMIYCNRGNDMKVNFRVSGTMEIPDSAIPHEDILNQLYALEFNNKMYMLQMCLVAESPDGEYEMVHQFEEMEEHGIKNVRYDDAEFEPVVED*
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