Scaffold Ga0105099_10309739

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105099_10309739

Scaffold Ga0105099_10309739

Overview

Basic Information
Taxon OID	3300009082 Open in IMG/M
Scaffold ID	Ga0105099_10309739 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	927
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Name	near Jamestown, North Dakota
Coordinates	Lat. (^o)	47.0991	Long. (^o)	-99.1044	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038230	Metagenome	166	N
F041020	Metagenome / Metatranscriptome	160	Y
F061663	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105099_103097391	F061663	N/A	AKDGANCKKLVTWLKKVSASEQAPDEMVKMFTTAAWQISDKWLKANFTISNIYSQANNIYTKFMYSNPAAQEKRRQEEIERLVNEYQP*
Ga0105099_103097393	F041020	AGAAG	MKLTPKEKAKVLYENYYIIIQNIGGELGNEILVSILAERCALFFASQMQTEKYSQKKYKAVEYWEEVELEIVNYANFKL*
Ga0105099_103097394	F038230	N/A	MTKQDRNAYMREYMKKYRATMNEYTYKKIRERENLRLRAKYHAMSNEERQKYIEYQRTYHKLKQFTNE*

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