NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099830_10026705

Scaffold Ga0099830_10026705


Overview

Basic Information
Taxon OID3300009088 Open in IMG/M
Scaffold IDGa0099830_10026705 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3844
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033384Metagenome177Y
F037611Metagenome167Y
F074959Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0099830_100267054F074959N/AMVPPRWPDEQGRPIPTYPCPRCGPEVASRFRGFRVENLRHVGWQLFRAETYVNWCGHAQEIIPLPLPDGRVTFVPVLVEAT*
Ga0099830_100267055F033384GGAGGMPGVYADFRGFVLAHRPCTGPRHTSAGAPAVNGYRLLVVCGCGAEFKRWVTLNDTDEDLLKAALLAFEN*
Ga0099830_100267057F037611AGGAGGMIRAKERPSHPHASGWSISGGSGASENELRRQIRTRLSEARLPAVDGVWKSQSGTGRPCIVCRKPIEPIQVERQVDGVGIALIAHEACYTLWGEESVARLRERAEGA*
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