NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099828_10003198

Scaffold Ga0099828_10003198


Overview

Basic Information
Taxon OID3300009089 Open in IMG/M
Scaffold IDGa0099828_10003198 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11434
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013998Metagenome / Metatranscriptome266N
F014491Metagenome / Metatranscriptome262N
F016650Metagenome245Y
F040025Metagenome162N

Sequences

Protein IDFamilyRBSSequence
Ga0099828_1000319814F013998N/AMRLRMPLKMHRLLSLLAFVLALIGGVLVVVSALGGLERLSIGSLAINGLVFLFGLGAMLGGWLIYTGIRKLGGIITLVAGIILFVLTGGAGTSVLLVIVAGVLGLVAAEMKPWWAFWR*
Ga0099828_1000319815F014491AGGAGMPGNPKSSWHNTAMILLILAALAMFGTIAYIITLQDVTNSAISYITGLLISVTGILLGLSGLTPASRSLERMKLQVTLTITTLVWLVAVVMIAQTAGPFAFATSSATLRYLFLVGIALFTILVVMYSTSTIEATRQRLMAEQAAKSSQPGRTTG*
Ga0099828_100031983F016650N/AMIFSQPKGTSVSKMTVQEIVPGTEAGKLQVELRDVFSKILSHARRIDMTLALGDSVEALGQIRELELYLERGLVVLSRPLDYESEMSG*
Ga0099828_100031988F040025AGGVNSEDYESPEQLLLSDPVRRKALELFEHEQESTGEEYDFGEMFARILWERDWTDKLASIIGKIRNRFRLRNTDTELSGELKALIPDMNEVARAYDEMTSGYKEFIRTVLQAKSRWQEDE*
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