NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0099828_10082295

Scaffold Ga0099828_10082295


Overview

Basic Information
Taxon OID3300009089 Open in IMG/M
Scaffold IDGa0099828_10082295 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2750
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000624Metagenome / Metatranscriptome977Y
F000703Metagenome / Metatranscriptome928Y
F002853Metagenome / Metatranscriptome526Y
F015771Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0099828_100822951F015771N/ATNGWFDISITDPSGARPGLFYFAESDVTPAFGAPRVYFMGASRNLYVQLGNQTLFWRAYSQYIGSQPSAPVTFGAPPIAVTGGGSSGPAPLPSSGSGVFPNGVLRGANGFGIHPGSRIVRQALL*
Ga0099828_100822952F000703N/AMLIREYHERDLQALRAIHAAQGFDYALPNLCNPLFVSKLVLTDGNVARDRAPSAAEHQHETAAAQQAQTGREGQGEILGAALLRLTAEAYLLLDPRAGTPRQRWQWLLALQAAAERDAWQHGLEDVHAWLPPPIAKKFGRRIERLGWLRDDAWTPYCKRLAEQA*
Ga0099828_100822954F002853GAGGMGRGAQAYTRQLTDEQLASLNSLNQQFLGQQQQAGNLLLPQYQSILNNPGLSPADKAAVTGQSQGALASAFDALQQSAQNRLARTRNSAGFGELADELARQKGIAEAGQAQKNQLAFTNTAFQRQMAALQGLSGLFGIDSNLLARTLGIPAELLNARANASRNAGGGFFSALGSGLGSTLGALPGAFF*
Ga0099828_100822955F000624GGAMPAHWYGLLAAVTSIGVQFVLFLRWLHRRVRNDEIARAFIHDMAMNHLPHIYDALHKIAAKQGIALHETPLVRFVDLNGHGHRRR*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.