NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099827_10023257

Scaffold Ga0099827_10023257


Overview

Basic Information
Taxon OID3300009090 Open in IMG/M
Scaffold IDGa0099827_10023257 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4346
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007684Metagenome / Metatranscriptome346Y
F013288Metagenome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0099827_1002325710F013288N/AFELRLERGAGRARVAVGVLHATTGLVAEGQGVAVVQYGIGSLWEIAPEVSLGVARFGAGLEARVAAGPAFDWWNFDGEQRNRVGGRATAVVEWPLARALMGSLRVTGVWSGSVFDPGDTPSGVERRATRRFGVALGLRYRL*
Ga0099827_100232574F007684AGGMTPGRRYLVGVSAVAAAALLLSFVLPPEARTGVWLATALALLVQGPLGWWLVRAIGTERVQLVWAVGIAARFALVAACGFLVAPRLGLALAPLLFALVGVLMCCVVVEAVVVRSATEVR*
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