Basic Information | |
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Taxon OID | 3300009090 Open in IMG/M |
Scaffold ID | Ga0099827_10025986 Open in IMG/M |
Source Dataset Name | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4157 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California, Eel River Critical Zone Observatory | |||||||
Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012563 | Metagenome | 279 | Y |
F016134 | Metagenome | 249 | Y |
F039072 | Metagenome | 164 | N |
F053955 | Metagenome | 140 | N |
Protein ID | Family | RBS | Sequence |
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Ga0099827_100259863 | F053955 | GGGGG | METRNRLGQTRVTTIELALTSTLAAVYIVSAFFALTPFIGGPGFITLEIVMLPIIAFLLRPVLATAAALVGSLGSAFIQTSFFHVFGLPGLLIPLLAVALGSIAFHYEWGPIAPWAYVLAGAVYYTIFSKGGTLFWLAPYTLVIISLPAALRAKDPYRTGLLALYTAMSEQVSLNVFSISLLNLTGDFWIGVTPLMFLERTVATLGAFAVIVALKSQLGRRLELGRVLREVK* |
Ga0099827_100259864 | F012563 | N/A | MEDSEMFLGGFAGGFLARGLTHIGYGIYFTTSRLIGIDLGANGGGALGGTLAGFIHGELMPKLSSEESAKTITDLEQMKEFEIEKDQISRIELKKPGLLGTGHIVITPKEGKPEKITLRHRIAYDRLITLTKAFSPEVVRSS* |
Ga0099827_100259866 | F039072 | AGTAGG | LTKFMMSLRDENYRVLTGAAIDRGISVQELLRAVIIPDWVKETPRGIVADSWPSIRPRR* |
Ga0099827_100259868 | F016134 | N/A | MPKPVLTVELKELHDRASEATQFLKSKVEGKMRTKGTQLQIEGAKTKEIKLLLHKFLHHQGLNHYRVLSQSGVLEVTPPEKRVLHLPEREGSPPTAAQTTPYLFPQTPALTPEKRKRAKPKHKRE* |
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