NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099827_10187651

Scaffold Ga0099827_10187651


Overview

Basic Information
Taxon OID3300009090 Open in IMG/M
Scaffold IDGa0099827_10187651 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1713
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001925Metagenome616Y
F016512Metagenome246Y
F018335Metagenome235Y
F083989Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0099827_101876512F001925N/AMVTPYVPAVVELKVHEATTVAFAVILTGAGHVTVKPVAGLVTGVRVTVPAKLKVLVRLTDIAEPVAPELKFTGLPTEIVKSPT*
Ga0099827_101876513F001925AGGAGGVFAVILTGAGQVTVSPVAGLVTGVRATVPAKLNVLVKLTEIAALVAPELKLTGLPTLIVKLPTWTVDAAE*
Ga0099827_101876514F083989AGCAGGVTVNPVAGLVTGVRVTVPAKLNELVKLTDIAEPVAPELKLTGVPTLIVKLPTWTVEAAE*
Ga0099827_101876515F016512GGAGMVTTNVPVVGEVHERLDVPVPLAVSDTGVTLNRLQVKPAGRGVSERATEPTKLNVLVRVIVDEIDEPAAPLGDVAVIVKSPT*
Ga0099827_101876516F018335N/AEEGAHVPVTAPDVTVRLVGQFAVRPVEGETTVLRVTAPVKPPIGVIVIVELPVAPVLKSAGDEAVIEKSAPTTKVNVAEVG*
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