Scaffold Ga0105240

Basic Information
Taxon OID	3300009093 Open in IMG/M
Scaffold ID	Ga0105240_10034491 Open in IMG/M
Source Dataset Name	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009093 Open in IMG/M

Scaffold ID

Ga0105240_10034491 Open in IMG/M

Source Dataset Name

Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6526
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

6526

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Michigan, USA

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014566	Metagenome / Metatranscriptome	262	Y
F043119	Metagenome / Metatranscriptome	157	Y
F075370	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105240_100344912	F043119	N/A	VYVSLTPNAICLYVVHLTFAAIGKNHPMKPTGNIHRLPATDSWQRQPQIKNALVHRIKNITGEIHSIQAEMHGQLNEPAGENKLARFFEDENAVQSLNDFKAELDQLRRILWFYLEQASVQPSAAMSNEQHDTRLQRVNELLRTLAPATKSVIAGEAIQPSVSFFERLDVVIDTYMQEKKPVAQVKAKAAKAGY*
Ga0105240_100344914	F014566	AGG	MMFDIITIFLVGILLLVAIYTAIQFRGKFPKRTIEDVTPFLRPAEHEELESLLDPAQETNFRMRMSPQEFADWQRRRIHLLREYLLRMSHNALVLIEWGNMETSATGNDAETVRQRQLMAKELVQAATEFRLYSMLALAKLKLWLVLPSPFSLLLPSPSLPSMRHLFGIDALGCYQRLKTAASSLSLTHGLQFRDALLERL*
Ga0105240_100344915	F075370	N/A	VGTGLAAVLCLLLVVRRYYREFPVFFASVSLSVVATIILLGVSHNTHYYALVFWPSEALGVFLEFFALNEALRSVFRNFLGMRWFRWLFPGIGIAMLGVAALRILLHPRPAFSLFTTTILGLEIAVGFLQFGIFSLFVALMRLFHLRWGQHAAGIVFGYGVSAAGSLVAFLLRSEIGTKFDPVIRIAPTIAYIIGVAIWLATFLKAEPVRPEAAWATKLTPEQMTLELRRHTKTVKGILGR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105240_10034491

Overview

Ecosystem & Geography

Associated Families

Sequences