Scaffold Ga0111539

Basic Information
Taxon OID	3300009094 Open in IMG/M
Scaffold ID	Ga0111539_10000003 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	880006
Total Scaffold Genes	777 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	449 (57.79%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

880006

Total Scaffold Genes

777 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

449 (57.79%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8444	Long. (^o)	-83.9599	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Tennessee

Coordinates

Lat. (^o)

35.8444

Long. (^o)

-83.9599

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001605	Metagenome / Metatranscriptome	664	Y
F002548	Metagenome / Metatranscriptome	549	Y
F004033	Metagenome / Metatranscriptome	456	Y
F018610	Metagenome	234	Y
F092677	Metagenome	107	Y
F094358	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111539_10000003253	F094358	N/A	MLDLDGLQVAYLGVALAHYLDLETGEIIDLPLDAEAPGEDDRFLRIPTRTPESETEDRRLFVEKLPPSAMRDQLESTIDDWNAFRHVLLEDRKTERQFFNFKNDQATRAIEEWLTSEGIEPSS*
Ga0111539_10000003280	F018610	GGA	MGYQVPMIEVAVTVAMAGLDPEEHFLYLAPYSDRRDGPETVADYVNGRRRFFPMLAGGVPKMVNRDQVLWVRYEKLPAVVDLEETIVERLTILELVDGARIEGVVPTTDRPRELSRLSDVLNDATEEFLRIDADEDTYFVNKAFIRRVIPR*
Ga0111539_10000003306	F004033	AGG	MKNFVVGLVLLMFAVAGFAADRPASPEINPPANGEEWLKLSSTEKLFWSVGYAQGYTEALSKIDVTSGPTSPCASLAVRTERQTSTSGKLSGFELVSGLERFYSEPANTVIPLGSAIRINLLQASGKDAVTIQELIDTARVLGLQAAARPRQ*
Ga0111539_10000003492	F002548	N/A	MPKFEYETHTEPDSAFFERRRLRRVRMIVELTLNLISSDRTVSHREARCLVDCARKAILELFPGFDVRYERIVQPSFSRVLQQRWPEEELSYADPHEMVN*
Ga0111539_10000003495	F092677	N/A	MLLVVLAGACGGQAPIDHQSEWRDVLRHKQAAVAPDASPDQKQVYADSVRAFVVKHPNHGRAVEVWQRLQLEFADDLAEAGRYQDAIRIYRSVLTHHPENDHARSGLALAAARLAVSREGLLALRKGMSHRQVASLLGKPIPGWSVKNRRAGATFEAWYYRTRTGSLAGVYFRDGKVFAAEETSNERLGRLGS*
Ga0111539_10000003620	F001605	N/A	MSDESPRQALPEAQSLAQLPLKILEEVIRQLRSTRNDIIRFGVWNIRNLTDDEFNKTDDRKLFGYFRQDLLETRFLSKGRRIDLVQLWRWFDDQMSGVEPLLVDKREVFLNIQDKDLDKVRKRIEEIQSFLPALRSDDLDGFRRVKYKLRRTVMRLTYDLHHVFKRLEKHRKNIFMTSGAPHPERERLPLEAVVEIPEPPMVEDHEEVDA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0111539_10000003

Overview

Ecosystem & Geography

Associated Families

Sequences