Scaffold Ga0111539_10000033

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0111539_10000033

Scaffold Ga0111539_10000033

Overview

Basic Information
Taxon OID	3300009094 Open in IMG/M
Scaffold ID	Ga0111539_10000033 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	154510
Total Scaffold Genes	151 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	91 (60.26%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8444	Long. (^o)	-83.9599	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002324	Metagenome	571	Y
F084700	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111539_1000003315	F002324	GGAGG	MGEVRLFQICYEGELTVEVSHVMRRLGAEPNFDQSWQVFLPEGRHAAPLVRYLRAQTAADARLLVACTQFTTARDFLLVRHSLTPGADYSELHEALERLGTVVALPFESTFVIQSLYATEMRTDVNTLGLALGELCPDESLMVTGISHDWAYSDSGVSRMFVGDAFEEAVFKTF*
Ga0111539_1000003348	F084700	N/A	MDAMSAVHLPMSERVLDKLADILFATDEILDMIRVEERLPDATTVAVENSVQGVYDQINELMKKLAD*

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