NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0111539_10034556

Scaffold Ga0111539_10034556


Overview

Basic Information
Taxon OID3300009094 Open in IMG/M
Scaffold IDGa0111539_10034556 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6129
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045732Metagenome / Metatranscriptome152N
F064703Metagenome / Metatranscriptome128Y
F066928Metagenome / Metatranscriptome126Y
F095448Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0111539_1003455611F095448GGAGMVASTLTHQPDSAIPNIACPKCGLRMQVAAIEPAGGDDRTVTFGCDCGHRYDLSERAIVALARDSSDRW*
Ga0111539_100345562F066928N/AMSPAEQYRALAAYLRTRAARESSPMLRGQWVNLARCYVRLAEQADQNSRADIVYEFDRSNWRGGVGGEPA*
Ga0111539_100345568F045732GAGMRQRRRRVFIDTHKGRVSAGFTVAAEADAADVSMRLRERGWIAYRLRLEAEQHVWVATVIDWTRRAA*
Ga0111539_100345569F064703AGCAGGMRKGLTVLIVAVLGVFAIKSVVASGKIHLGDSQKYAVPTYGLHVAQPVDMKHFPSDVIPLP*
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