Basic Information | |
---|---|
Taxon OID | 3300009094 Open in IMG/M |
Scaffold ID | Ga0111539_10044284 Open in IMG/M |
Source Dataset Name | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 5333 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Tennessee | |||||||
Coordinates | Lat. (o) | 35.8444 | Long. (o) | -83.9599 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F037297 | Metagenome / Metatranscriptome | 168 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0111539_100442841 | F037297 | N/A | QPDSSPAGIACGTGLTFQATGRALYVTAGPEWKIRRGKRFAPFAQTLVGIVSTRSTFMMSGSDVQYTNPFSGGVLLFTSAGFPQDRSINYADAHADAGLALAIGGGFDIRLSKRLGVRVVMDYDPTFLVRPVFPDLTPDAQGRVALRPASNERHRQDHVRLSIGMVWHIR* |
⦗Top⦘ |