NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0111539_10123122

Scaffold Ga0111539_10123122


Overview

Basic Information
Taxon OID3300009094 Open in IMG/M
Scaffold IDGa0111539_10123122 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3039
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002582Metagenome / Metatranscriptome546Y
F024669Metagenome205N

Sequences

Protein IDFamilyRBSSequence
Ga0111539_101231222F002582AGGMDTYHVVLYIHLLALFIGIGAASVLLACLLQLRKAQTLAEAGPWGMVAGKVSRLFPIAILGLFGSGAWMTSDIWTWSTRWIDVSIAGLVVISLQGPLVAERTAHKLKHALMENGPGPLGERARRMTRHPGLWVSEFTNIGLVLGIVWTMTQKPGVWSSIAALVGGYVVGVALALPFTRAPAEELAPSPEPAA*
Ga0111539_101231226F024669GGAVKTTVERGVAHLRKPQTTEQLHDGLVRTLRQLRDEDASTATGRNGRALAIGGFTWTLRGIDARLEMNRNDSGNLEGSVRDAVRADRDLRKGARLLRAAGRSLGIRIGKLNGF*
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