NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0111539_10400823

Scaffold Ga0111539_10400823


Overview

Basic Information
Taxon OID3300009094 Open in IMG/M
Scaffold IDGa0111539_10400823 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1598
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010019Metagenome / Metatranscriptome309Y

Sequences

Protein IDFamilyRBSSequence
Ga0111539_104008232F010019GGAVVKTFLAIPLVLLLTVQKPVKKPDVHTDFQFGSYPWSRTAETLMQEELAREVVVAYSQGWSIDKIAKTLKIPANDVSKVSDKLEDERLVARQESDYDPSPLMPVVRERDFDRMREPLARHTQEFAKVIADNWKDIEAMVDSLSVSKTIPKGRLMYETVVSGILLGGLMDAFYEDQTLMPSPRRRGKSDRYFAWLVESNPDVAGKLRRELRESAGYRVVTIGTALADEKLNPDDMRGKDTVLEDVDARKYRTFIGTFTRDKLLLYFKGRRPEFFKLASVLSSGRSIAFADFFAWYYNTMANGVTDTLIAQKRITPPEKLYTYAVKAPQ*
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