NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075418_10780356

Scaffold Ga0075418_10780356


Overview

Basic Information
Taxon OID3300009100 Open in IMG/M
Scaffold IDGa0075418_10780356 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1031
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007249Metagenome / Metatranscriptome355Y
F061196Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0075418_107803561F007249AGGAGGMAKKIREFMTHREPPEHIWMERDESAVIGTARMGQRMVPRIRPFDLLRSAPLSGNRARVAIFEGDSLRVAVEHIAGREAQLTRAADHDVVYLQFCGSSKIESESGVVEVEPGEIVLVPAAISHRTTGTNQCLRVRVATQECVTEGVDPEKPTMQRQFA
Ga0075418_107803562F061196N/ARFPAFLSGSVDAAPLSPRDITQLGSIRANTLADISKEIQLVWNGVAVSNKLLNDNPVLVERFLRALAKGREFARRYKEPTIAMVSKHTPLPPDALLVDYDTALSSMTDEGSVADEVLKDEILTRAELIKAGSIPDPSRFYDYSIIKKIYAELKKSWKPKL*
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