NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0117940_108207

Scaffold Ga0117940_108207


Overview

Basic Information
Taxon OID3300009118 Open in IMG/M
Scaffold IDGa0117940_108207 Open in IMG/M
Source Dataset NameLake sediment microbial communities from Pelican Lake, MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)739
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment → Freshwater Sediment Microbial Communities

Source Dataset Sampling Location
Location NamePelican Lake, Minnesota, USA
CoordinatesLat. (o)46.612069Long. (o)-94.156828Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094061Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0117940_1082071F094061GAGGMGEGKHDVEIRGGQEFGLAFFKPSLSGDVLTLGAVSIAAGVIEDTLSAAVGTALDVASQGRGAAVKEVGDDSVLIWG*

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