NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0117938_104374

Scaffold Ga0117938_104374


Overview

Basic Information
Taxon OID3300009119 Open in IMG/M
Scaffold IDGa0117938_104374 Open in IMG/M
Source Dataset NameLake sediment microbial communities from Leach Lake, MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)962
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment → Freshwater Sediment Microbial Communities

Source Dataset Sampling Location
Location NameLeech Lake, MN
CoordinatesLat. (o)47.18868Long. (o)-94.626271Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049730Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0117938_1043742F049730N/AAEIMQSRRELRGKRKPSMLILGSFEKLKQDLIPALFRIATDHEIGDIDIIPSSEAVDLKRLMGYTLIFVAFEIYRDNESFFRMLPESIQDRITILTRPADFPSVAPEIRCACFCTELKALLPREEAQLFDHHTESAKPRKRKV*
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