Scaffold Ga0118687

Basic Information
Taxon OID	3300009124 Open in IMG/M
Scaffold ID	Ga0118687_10000536 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15383
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (80.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

15383

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (80.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location Name	Hudson Canyon, US Atlantic Margin
Coordinates	Lat. (^o)	39.54345	Long. (^o)	-72.3998	Alt. (m)	Depth (m)	541.1
Location on Map

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Source Dataset Sampling Location

Location Name

Hudson Canyon, US Atlantic Margin

Coordinates

Lat. (^o)

39.54345

Long. (^o)

-72.3998

Alt. (m)

Depth (m)

541.1

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010613	Metagenome	301	Y
F010614	Metagenome	301	Y
F013407	Metagenome	271	N
F017125	Metagenome	242	N
F034560	Metagenome	174	N
F058112	Metagenome	135	N
F105093	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118687_1000053612	F058112	GGAG	MTPEQRQQLTIAQAAAQARNREAFRTNPNLQIWLRQVRTAAVIRRTAHNFARWKNE*
Ga0118687_1000053613	F010614	AGGTGG	MNDDETYKQWAKLCRMYITRGNAEIDQMVSELHTMAGIREGFEDADAWEAMHDRAVQDAESQRPNSPEYAWALLRVLGVKLWMVRALEAMEEGADA*
Ga0118687_1000053620	F013407	AGG	MSGPITRHHWHALAADIYARGGYRNYGIDPMSILAMLNTIVPQVLQWVADCKRLRDDEVQPAVAAMHARNPAQAKRRTAAQCKKLRRKQGEQFCKEFNVPRGNRRVILQADFTLTDEQSTAMAEDMIAECCNRSAEDVARFAAAARGA*
Ga0118687_1000053624	F034560	N/A	MADQNETPQDDDNDGVEWRTLNRTVRVDARTSQKLIDWIGPHLRLIVAAVAWGVFIVATCYAASLVL*
Ga0118687_100005363	F105093	GGA	MILQRLNAAGPMPLNSAAASIMPLVPFAYVARQGKGSALIAAKIKLRSLQAGGWVQIAAGVVTVQRTERQSSRLRRCVDELNRTGRCDTSAIWSNKRSAQTVISRMKLLGWVAPDDVWPVVSFVGRQPASADEFNAHKQAARVSK*
Ga0118687_100005364	F017125	AGG	MKRQYATGPGLRPNVFGIWRDEPGHSMYEDDEPEPATHWTTERSERDRQISEFVRWRIARGERIAAESEQRRQRIQAARSAAAVMGADVFRAFIKGCNNG*
Ga0118687_100005368	F010613	GAGG	MTPNPEHVQLLILDHERAREHLREQLRTQTPWMIAELITRGWTAQRIARKCGRTREHVKAIHRQERRAGAAVAFSIAQVLIEAREEAKCT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0118687_10000536

Overview

Ecosystem & Geography

Associated Families

Sequences