NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118687_10000753

Scaffold Ga0118687_10000753


Overview

Basic Information
Taxon OID3300009124 Open in IMG/M
Scaffold IDGa0118687_10000753 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12558
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (34.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location NameHudson Canyon, US Atlantic Margin
CoordinatesLat. (o)39.54345Long. (o)-72.3998Alt. (m)Depth (m)541.1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031840Metagenome / Metatranscriptome181N
F086721Metagenome / Metatranscriptome110N
F098878Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0118687_1000075322F031840AGGAMDTLKQFKTFDDLVFSPHPHFKDLGIQANLTLDNGYSFSVVANVEGGTFVYGNHPDTYEVAVFNQRGNPVPLSVSGDHLSYQQPHEISALMRQFEMDGILHEHLLVAIRQNYNERQPL*
Ga0118687_1000075327F086721N/AMKIIDIIFFTANDNKVSAHLYFSTQDSVCESVSSVGVSRKQAVFNLCKEGKLSWDLFAKVKGLALTKKDPRFEKKTFVSRNSIRDQKLADICDDMRCSVTEAVAFLDRGVMPCGW*
Ga0118687_100007534F098878N/AMNETKVTESEITKSIEDYLDGCSKQELLDLHNFIFSEYISDLDDVEWGE*
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