Basic Information | |
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Taxon OID | 3300009124 Open in IMG/M |
Scaffold ID | Ga0118687_10000791 Open in IMG/M |
Source Dataset Name | Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12315 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (57.89%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin |
Source Dataset Sampling Location | ||||||||
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Location Name | Hudson Canyon, US Atlantic Margin | |||||||
Coordinates | Lat. (o) | 39.54345 | Long. (o) | -72.3998 | Alt. (m) | Depth (m) | 541.1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F023961 | Metagenome / Metatranscriptome | 208 | Y |
F042637 | Metagenome / Metatranscriptome | 158 | Y |
F055856 | Metagenome / Metatranscriptome | 138 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0118687_100007911 | F055856 | GGA | MPRYKTDRPFTEEQLKAMDIIHDPDTVLFEDQNEPSYTVDGFINDSECESLSSYFKDNFDRIGHNINDHVLHITYPMLIAEISDIVRPKIYEHFGDDVVFYSDVAQSDPMSVGDQFFKSVKPYGLHTDAVTHLTGYRPYKDIIIPVELDSIPVSEYVTFNQRYRGRATHFMRGR |
Ga0118687_1000079114 | F042637 | N/A | MAIFSGKIIEAYFANSENDAVEVIYKDGNKAINHYLRVDFNDSDFKDLVSEYNTDKIAEATIARNRNYAKQISDLVDAGIKSRTDLKQKITVDDFVKKVIDFDPEDPECKEILFTFKVQIFETKKLKESTNNDYKSRLRSAKTPIELMSVYHGTDD* |
Ga0118687_100007914 | F023961 | N/A | MSNFIETNYNANITLLKSYMNGDWQDSNELYKEYMSWENNKFFVQEIKNFDRPLLREIKKIWNHIGIRPREWRCNFFRVLPGGELPLHVDVLSKCSVVIPMTEMTGELYFEDGTEVLYQNMTVINTKVAHGVKAPTKERIVFHMGIHDTPFEEIKVGHDT* |
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