NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118687_10000880

Scaffold Ga0118687_10000880


Overview

Basic Information
Taxon OID3300009124 Open in IMG/M
Scaffold IDGa0118687_10000880 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11683
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (52.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location NameHudson Canyon, US Atlantic Margin
CoordinatesLat. (o)39.54345Long. (o)-72.3998Alt. (m)Depth (m)541.1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024774Metagenome / Metatranscriptome204Y
F056625Metagenome / Metatranscriptome137N
F082619Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0118687_1000088015F082619GGAMIITRLNESEIQQAAYVGMQRCAYAISHFKEISGYENKWQREIEGALAEFAFAKLMNIHWDGKIGVVGKGDVGSWEVRHTHNPDGHLLLQPGDLNHAPFVLLTGQAGVYTVRGWISGRNGKQYKYWGDKYNTGRPCFWVPQSDLLPMERHSAFPNSSYKEIA*
Ga0118687_1000088019F024774N/AMVVAQSQESRMTEQEIEESRQRAAARHQAFLDETARLDRENKYWEYRARNDLKRICFLYECSDCGKLVGAKHALNCPDKDMTPVMPSEMSLSERIHRKEDLFNDLNWDYETDVAKLAELLT*
Ga0118687_100008802F056625N/AMIVNLSPLEIDFLLRELAANQGMIAPSASIPAWYRHSIQETLRDALLADRKERWALSDKRHKELLDAEKEGLVREYTRQAEANQSRLQGAYAQAGNEGGTDSESL*
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