NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118687_10000923

Scaffold Ga0118687_10000923


Overview

Basic Information
Taxon OID3300009124 Open in IMG/M
Scaffold IDGa0118687_10000923 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11366
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (40.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location NameHudson Canyon, US Atlantic Margin
CoordinatesLat. (o)39.54345Long. (o)-72.3998Alt. (m)Depth (m)541.1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002867Metagenome / Metatranscriptome524Y
F003661Metagenome / Metatranscriptome474Y
F017824Metagenome238N
F047029Metagenome150N
F051901Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0118687_1000092312F002867N/AMTVVHSDDMGDGFMLEQIENDKGEIYYRACKDSICRYAEDEYIARMYLEGMGWNP*
Ga0118687_1000092314F003661N/AMDPTTAAVVAIAIAAGSEIIGMLPIKDNSWVQLVLRVLQAAFPAKKEK*
Ga0118687_1000092316F051901GGAGMTPPPKINFTKAAADMARADYLDALFFKDGRDNPNHPFHGTYTGLYQKYTLEKLG*
Ga0118687_1000092317F017824N/AMMKNGVLQWQEDFERSQRLGEGRSRTSSERSDLYELQIWLAGQGAMRDLIRAESLQQAILFAENRYPGCRVDVPPSTAKKPKLARSRTSPSVVAKKRKKTAESK*
Ga0118687_1000092319F047029GGAVTDKVGSTSDNPIKLTQYRVTIWPKHGATENIFMEAPDVYTAHMYTRRVYPEHTILAIKNVLDL*
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Institute for Fundamental Biomedical Research
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