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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009124 Open in IMG/M |
| Scaffold ID | Ga0118687_10003672 Open in IMG/M |
| Source Dataset Name | Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Oregon State University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5375 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Hudson Canyon, US Atlantic Margin | |||||||
| Coordinates | Lat. (o) | 39.54345 | Long. (o) | -72.3998 | Alt. (m) | Depth (m) | 541.1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002444 | Metagenome / Metatranscriptome | 558 | Y |
| F003693 | Metagenome / Metatranscriptome | 473 | Y |
| F018479 | Metagenome / Metatranscriptome | 235 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0118687_100036722 | F003693 | AGG | MIKSKLALIDVSADASNSLGVSTEGMLLCGIQFPAAMTGSAITFDFALDNSTWVDVKETDGTDTSYTVSVGDILRVDPSGWAFASNGYIRVTSDGTEAADRSIVLHFRHS* |
| Ga0118687_100036723 | F018479 | AGGAG | MANIGNLVDRTYREYLEPMDDIVSYTTLTGAINDTATSVAYNGDLLSVEEEDALDAGAIIEIGQELMICTDLNAVANTITVTRGARGTTAASHSIGDLIKIAPPFPRINVFDAVCDQIKNLYPTLFAVETKSITSKVGYIPLDGSTDNHLVAPIKAISQYTDFSAGSDETGTVFQGVATELVDLPNPFTYTDADGVEQTITYSNNGPDKVNAIQVYNVNAGHTVFVTFKKKFVTPTAESDTLATVGLEDEYEPIIMAGVAAQMIAGRDIPTATADYITDQMGTSNFPVNSASSIRNSLLQYQRALIQQARKDLRARYPEPVTVNKIAYT* |
| Ga0118687_100036726 | F002444 | N/A | MGMLLILKEGGSLLIDTIGNLPIDEDIDLLPDAGGSLSLAFREIMEAISVTNSTSSQARAIVMGV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |